NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311331_10702505

Scaffold Ga0311331_10702505


Overview

Basic Information
Taxon OID3300029954 Open in IMG/M
Scaffold IDGa0311331_10702505 Open in IMG/M
Source Dataset NameI_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y
F103703Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0311331_107025051F103703N/AISVNPTDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0311331_107025052F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLATDNNLRLAILQMPPGSLLVAWNGTTPRRLTGGALHFAHRFAIYLRAPEQESTATYADLFWLLVSARPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0311331_107025053F010139AGGAGMDSVFMRSPEGEVKEVEATTEKLTILMASGWHQVSAPAAAQKPVVVAEEAEQHG
Ga0311331_107025054F070324AGGAGGMANISELLNGWGFGKQTAIGTANLVATIWRHTNLNTKPWA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.