Scaffold Ga0272380_10024404

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272380_10024404

Scaffold Ga0272380_10024404

Overview

Basic Information
Taxon OID	3300029959 Open in IMG/M
Scaffold ID	Ga0272380_10024404 Open in IMG/M
Source Dataset Name	EPA Superfund site combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6293
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.992	Long. (^o)	-106.0797	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F071903	Metagenome	121	Y
F094797	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272380_1002440410	F071903	AGGAG	MNRTEQAAAKRQDELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIEKMQENA
Ga0272380_1002440413	F038519	GGAGG	MKMSAIDYATGEDAAGPYTDEVLLQKTLEIIRQIDSNAEIISRECNPWSEQILAGLLPFRIHVDLVEGMPQLPAEVSITWPPSSMEGIQVGNQEFREYFVWAESEKAALRKLATLNKATQSYSPKAAAAEEL
Ga0272380_100244045	F094797	GGAGG	VSSSEDLEDIMDPGGLPDPETFLPTPAEAKALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTQNGEQLKLDACPCGGELVKDSCECLYCRDCGTVYDHHR

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