NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272380_10038593

Scaffold Ga0272380_10038593


Overview

Basic Information
Taxon OID3300029959 Open in IMG/M
Scaffold IDGa0272380_10038593 Open in IMG/M
Source Dataset NameEPA Superfund site combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4450
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038519Metagenome165Y
F060548Metagenome132Y
F071903Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272380_100385932F060548AGGAGMSTVINRPRQHRVTDFVDMQVATLMRNHAGEELCIEDLVDAAKKDMPNFEWNNSKIRNSVIRLEKKGLVNSRHEIRSKKLCRVPHLI
Ga0272380_100385934F071903AGGAGGMNRTEQAAAKRQAELQEAFGHLEYFKRTGSALDQAMKTMDKDLRVCKKNERIWEKRIAKMQEKE
Ga0272380_100385936F038519AGGAMKMYGIATDLGDDWAGPYVDQELLKKTLEIILQVDPNAEIVSKETDPFAEQIQTGLLPYRIHVDLVDGMPQLPADVSITWPPSSMEGIQVGNLEFREYFVWAENEKAALLRLATLNRAAQNTPKAAAAEEL

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