NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272449_1032809

Scaffold Ga0272449_1032809


Overview

Basic Information
Taxon OID3300029977 Open in IMG/M
Scaffold IDGa0272449_1032809 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2720
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5734Long. (o)-110.795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0272449_10328092F100012GGAGGMDREKVLQALREAQAEYNIEDLDNFIKTAWEEGDVLKAQFVAEMVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVTRLAELIEQNLKSRAVE
Ga0272449_10328093F069506GGAGGMQLEQSTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDSEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFIHVAGTVVNYEDIVRLVTKLLNQIQSALAAA
Ga0272449_10328094F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEALTGRKFGWHEDAFKDEWNYTGEFGFICVDPGTLRCLTAERTDDERCAVSVVFPILEIDDAVQAVEYFLRLVQQA
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