Scaffold Ga0272449_1081422

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272449_1081422

Scaffold Ga0272449_1081422

Overview

Basic Information
Taxon OID	3300029977 Open in IMG/M
Scaffold ID	Ga0272449_1081422 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1284
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5734	Long. (^o)	-110.795	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096328	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272449_10814222	F096328	AGGGGG	MTEAAYFWSKDAEVILAPYVQLLIGAERPPEISSPISATPWDYAFDDLLVDLKLACKARVYGRISEKTLADIRKSLENGVLVALFIPPHLYLLYPWDAIWDGSLESLYTCPSVSVPESVVDRVWEIYSRMTN

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