Scaffold Ga0302277_1190655

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0302277_1190655

Scaffold Ga0302277_1190655

Overview

Basic Information
Taxon OID	3300029982 Open in IMG/M
Scaffold ID	Ga0302277_1190655 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	809
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000926	Metagenome / Metatranscriptome	832	Y
F001490	Metagenome / Metatranscriptome	685	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302277_11906551	F000926	GAG	VLVRAAVFKSANALVGWLLQQAADRIDAAYQPKAGQQYKGRGSLQIDGMFGQFPLERAYYYDPVKKAGHYPADATLGLAGSYTPALARLMCLEGADQSSYQKAELHLAETGGIH
Ga0302277_11906552	F001490	N/A	MNELNPTQILQQIAQIQRLEPGKVCVIGQGPNGPYYNLQCRENGQPTSRSVPADQVAVVTQHTENFKKFEGLVSQYAQVIVAQTRVERMAGVKKKTRRRRSSWPKTRKSL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.