NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311332_10320503

Scaffold Ga0311332_10320503


Overview

Basic Information
Taxon OID3300029984 Open in IMG/M
Scaffold IDGa0311332_10320503 Open in IMG/M
Source Dataset NameI_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1191
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020980Metagenome / Metatranscriptome221Y
F023141Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0311332_103205032F020980GGAGMANILVGVFAIVLCLINAAVWTLISEKPLVGLGWVAAACACIWLQKWSRG
Ga0311332_103205033F023141GGAGMQEIAEVLNTADKSKRDRFDAQRVFLERRSEIWEAIQDGRFPATYISSGNRKFVGAPRRTAIRCDFLLASKISLGPKYNRDRISDLAQRDLLFSVLRDREVFPGRTGQKFYCCPKCTAKLYECVVSRVFRYIDNAKWKAEIESDR

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