NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311334_10058481

Scaffold Ga0311334_10058481


Overview

Basic Information
Taxon OID3300029987 Open in IMG/M
Scaffold IDGa0311334_10058481 Open in IMG/M
Source Dataset NameI_Fen_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2758
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002319Metagenome / Metatranscriptome571Y
F005617Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
Ga0311334_100584811F002319N/AEGVATLGRYLGSSGVSMSSEVVTLEVIASIPVKCDFWSEDDGWKGLCRSLSVTVGGTSFEDGKKNMADQLQVYIERMLSEHPERSVRRIA
Ga0311334_100584815F005617AGGMTHVEIPPQKRVSGESRQSTRVRLKVGIEAQGIGVPLTCEGETVVVNLHGAMIVTDAKLSVGLRIAIHVILTGKRAVAKVVYVDPDRPLYCGIALEKPQNIWGLSLPPIDWHEGESE
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