NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302190_10017358

Scaffold Ga0302190_10017358


Overview

Basic Information
Taxon OID3300029988 Open in IMG/M
Scaffold IDGa0302190_10017358 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3984
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000109Metagenome / Metatranscriptome2202Y
F010440Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0302190_100173581F010440AGGMTVAEAEERIEALTRNLASCEISPTQRGKYEAQMARCHRSIRKARLQAYRSLASFAGTLTDMIGDTAFDQNHNSAIITAAYLIRGASTEQLAVAVPAAIRETPRCNTQPTRVKCPEFTETVVCLLSLDKILFSCERNIAIRTALHLSNIVGRHQIYRSVRRAKADTSELEPKGTVNRLAEICAVNHPKKFGPSPRAPSSRRITSLSTPTTA
Ga0302190_100173583F000109N/AMLYNTSQKGGDMTTPKKAAIRTKRRIVAPLEKRTQLRLTIDTKFTKTHFNQLFAVLGIRKKNALAEHIIMNFKTKVAQAQIVAFYNGPWLNIPFQTIDTAFVFPLTYEIADELERVGGEVLGGVNRSKAFRVMVAYFASIYKLKSPTYTTGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.