NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10001356

Scaffold Ga0311339_10001356


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10001356 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43294
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (54.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021347Metagenome / Metatranscriptome219Y
F021633Metagenome / Metatranscriptome218Y
F030358Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_1000135611F030358GGAMNRRNKAARVFVILGGVVLFASAALHCFAGYSNVFPALTTSNLKPRLQAAFRVVFLSLGWHWLVTAIVALLAGVTETRLRKTLVLLCGLAVLLEAGVGASMMGFFIGNEMIGSAALLLVCGGLLFDQSGTKREDRAA
Ga0311339_1000135627F021347N/AMSTSMATTPISGERMLSLPFMASFSYVASPISRLVCLEVVEALRPAPRQRSSVAVMRIKPVIDMSVKAAMAVEPRTCSKKHPANKPIRPVVAVRSAVIRGIVEVSVRTNGSWSDIYAHGNLSLRHRCRA
Ga0311339_1000135632F021633N/AMSAPQYCTLVFADHHFHSEKADIKRGRGTDRKVYEGQISDSEWSALIAIIDNQGFRELKVPRTVPPLVMQDTHPYTISVARDKDFQNMEFLDNKSMKPYESQIKPLLQWWKSFRGQRLPESSVPADPRCALDTTHAIFAQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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