NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10026843

Scaffold Ga0311339_10026843


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10026843 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8316
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000072Metagenome / Metatranscriptome2651Y
F011530Metagenome / Metatranscriptome290Y
F013120Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_1002684310F011530GGAGGMEYLAELMQRLLEIQSGGRQRSPELIAEDERLMDGLQKKNLARKPLQTVRLSQDSPEQTRLRT
Ga0311339_1002684311F013120AGAAGGMEYFRLAHPPDRLILCNRPNCEGIADYLEVNEHGGEYFACAAHTNSERHASVLPKGVPSSERYQSRATA
Ga0311339_1002684312F000042AGCAGGMTSTKFIVKVDRGGTHAAEYVRRIDRTPIQTTTNRKLALLMGRFTAEDAVRSIQTSRCSSEMVSVKVQVGTAFV
Ga0311339_100268433F000072GGAMDAERIIDEIEQLREMFEAPDIRPLTASDISAANRRHDEMLGHSPWFRLWQRYGVCCRSEPPGIQLPHVES
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