NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10037434

Scaffold Ga0311339_10037434


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10037434 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6770
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000978Metagenome / Metatranscriptome815Y
F024149Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_100374345F024149N/AMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGLPPEGALNMAAWDMIRDLVSSGPALNEAAWENLRGVIGLLESGDNGRDPEPPSDAWVNFSRAG
Ga0311339_100374346F000978AGGAMHCLRCSREIEAGHKSVALYMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGLPPEGALNMAAWDMIRDLVSSDPALNEAAWENLRGVIGLLDSGDNARDPEPPSDAWVNFRRAG
Ga0311339_100374347F000078GGAMENMHCLRCSREIEVGHKSVALYMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGPPPEGALNLAAWDMIRDLVGSDPALNQAAWENLSGVLDLLPATGTDGAPRSPQA

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