NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10045358

Scaffold Ga0311339_10045358


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10045358 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5991
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031575Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_100453586F031575GGAVTTFPFAPSGLRPSWLRASVFALLVSASFAQQPPPVAPATPEPTSTGAEQPLGTVARNSKQQTSVRAKKVITEDDMDALANALPRLRMEGAENADEIIAAIGQYKASHTLEETAAVVEAWYERYDQDLAAAIQQNQVVNTLREENLSNGSELCRESGDYQSCEQKRRAEYIGVRHDQYTIRRNIALEVRIQHVFMKVRAGILRYNLRYDWFKVRTTNGIDTF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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