NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10154633

Scaffold Ga0311339_10154633


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10154633 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2686
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029544Metagenome / Metatranscriptome188Y
F052774Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_101546332F052774AGGMSERPLSSRGFREPLMIFSLCAGAILIALFFFGASFRLFVRESFMQRATSAHYEILSPRGVLPPEALMDFATKREAIFATLDKKLGGAGTNTKIRIVFDPEFRALPHADGIPARFYSVSGTTIRTTVDEKNPRLPATADAEALLNAAWGKPGNAQIAMWVATWLAGNWRGMEIGMAAAEVEQRLGHKRLASVLSDPGGEISHPDDRNLLGAAWINEIAEFGGPGAVRKLYAAKMPHPNVADVANVLGTAPLELDRQWQLWIFAYLAGMPSMPSDSGMPMNMPMAGSTR
Ga0311339_101546333F029544N/AMDRKTQLAAEIRALRTLCDESIPRNLRQNLIQSLGPRAFLQPEHQVVFESIRALFALGPVSEAQLRVHLNNRGFPDTDIEKYFQPATAETIDYNRSDKARP
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