NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311350_10197603

Scaffold Ga0311350_10197603


Overview

Basic Information
Taxon OID3300030002 Open in IMG/M
Scaffold IDGa0311350_10197603 Open in IMG/M
Source Dataset NameII_Fen_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035955Metagenome171Y
F044823Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0311350_101976031F035955N/AGPRMAKSIDLAPEPSRLASSLLSYIPAVCAFFAPRHPGARAAIFDRLRHARALSAP
Ga0311350_101976032F044823GGAGGMNRWAIVIAVTASSFGVGCQDEVRCERERLDLNKAWSELRAAATHRKLEGSDVPTWTVIENKAELLESSFMTRQVTWNSARKASDAIASKLPALESGDVGLASFRKSAESAIQQQSHFEKECR

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