NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311350_10615575

Scaffold Ga0311350_10615575


Overview

Basic Information
Taxon OID3300030002 Open in IMG/M
Scaffold IDGa0311350_10615575 Open in IMG/M
Source Dataset NameII_Fen_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)976
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001131Metagenome / Metatranscriptome768Y
F015118Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0311350_106155751F015118N/ARADHASRGPWTKVIAVLAERNWLQSSGQVHGAGDHGPNPAAEIAMQIAGRPQGLPAGSAP
Ga0311350_106155752F001131AGCAGGMNEVSRRRSHPQRDAGASGHPLPAPLVWTFDGPFELCLADIEDTLRRAIVMVGGVSRVALLIDFSLPALKRRVDAGDALQPAWGSFLERMARYGLPASPRVRHLPGAGPLATLVIAYRN

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