Scaffold Ga0299907_10133696

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0299907_10133696

Scaffold Ga0299907_10133696

Overview

Basic Information
Taxon OID	3300030006 Open in IMG/M
Scaffold ID	Ga0299907_10133696 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2047
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000573	Metagenome / Metatranscriptome	1016	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299907_101336965	F000573	N/A	GLMLGIMVLSVVYDREFEPVITFAFDTGRAIIKILDGLVSGNYWGQVAVNHLRERVNMTHVVLSLPAILISVVLVGIPLNWLLGGTRTAQRIAIAIISVPATVVLAVALFTFNALVPETYAALLRFADWIWQETLNALSASGDTIPGARKLTNVARQGFSGHHFVIMALCSMVAAFLVNGVFALGTKTRRPARV

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