NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311344_10066244

Scaffold Ga0311344_10066244


Overview

Basic Information
Taxon OID3300030020 Open in IMG/M
Scaffold IDGa0311344_10066244 Open in IMG/M
Source Dataset NameII_Bog_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4335
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064322Metagenome / Metatranscriptome128N
F077902Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0311344_100662445F064322GAGGMSRNDKEGMSKRREKTIRLNRFGNTLNYDGANGKTVKNISVSQGDHTLYVYIAFTDDTEAAVHFNTVPVADVILCGDVHGDLEPIARSGPTVLPELGYIHWDQIQQPPKQPKLKKRGRKVSPIAIALAR
Ga0311344_100662446F077902N/AGSATLAEAGSKGDFREDIKVKRITRREFNRGVGAVLKTLREARGVSQEELGEALRQNASNKTPEQEDQQLRTVAAICTVVSNMRKEQGLTPEQLAKRSHVPVKFVRNLEAANDLNPDAYFLFCLTQGFGISFHKFWHQVEALVGIPEAELLRDDDEDDCVEGEP
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