NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311344_10122350

Scaffold Ga0311344_10122350


Overview

Basic Information
Taxon OID3300030020 Open in IMG/M
Scaffold IDGa0311344_10122350 Open in IMG/M
Source Dataset NameII_Bog_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2884
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094508Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0311344_101223501F094508GGAGMSDKITFFYNALWIMHPVVQTAIAVAMVRSGRHRQFKYFFAYILAQILTFAVVFPTYRYAPSAAVYASWLSTAISVGLGFKVIHEAFLDAFRQFHTLRDLGTVLFKWAGLVMLLVAGVVSVSTNSSDVAPWMQAILTAQRCVRIIQVGMVLFLLVFARYLGVSRRQYSFGVALGFGCFAMVELSLVASWVGDHLNNLSMGLVNMAAYNCALLIWLGYTLAKSPARDATASLLRPQRWEQT
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