NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302274_10096852

Scaffold Ga0302274_10096852


Overview

Basic Information
Taxon OID3300030041 Open in IMG/M
Scaffold IDGa0302274_10096852 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1600
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0302274_100968521F003764N/AIHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSTLSRTRREEMVEEAQRLANLYAAILFEIGSAFGLRAADELKTVIEAACILDDWECPPAEQGLLFPIPNDPTTKASPATARK
Ga0302274_100968524F022571AGGMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDVPTTPPSEDDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHEP
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