NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302286_10492621

Scaffold Ga0302286_10492621


Overview

Basic Information
Taxon OID3300030047 Open in IMG/M
Scaffold IDGa0302286_10492621 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F067246Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0302286_104926211F000926GGAVRTAVFKSANALIGWLLQQAADRADRQYQPKAGQVRKGREAIGVQGIFGCFRLQRDYYHHPGKKQGHYPADAALGLEVGYTPALAKLLCLEGADETTYLKAEQHLQR
Ga0302286_104926212F067246N/AAGPYHKLQHWQDGKNHTRYVSAEELPALQAALTGYAQYQQLTEQYAGLVIEETRQQIAGSKKKKPHRKSFLPRTKKSSN

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