NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302177_10309547

Scaffold Ga0302177_10309547


Overview

Basic Information
Taxon OID3300030053 Open in IMG/M
Scaffold IDGa0302177_10309547 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010657Metagenome / Metatranscriptome301Y
F018347Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0302177_103095471F018347AGGMADQAERVILEAEDQVTPIVDKANAGLDSFEKKAESSHGKVIRISDQTRSSVQRLIASLEKQAETYGKSGVERLITQRDQLLQRYNREPQAIDAITRSYEKMIAMEEKAAREALAVKGAKEAEEALRKQAESITSFGERVSQFMENPLQGAKGAVSSVLTALGPFGIAVATGAAVLGTIAVSAF
Ga0302177_103095472F010657N/AGRRGYPDYKAARGLQPIRDWTWSSHTLRCLKVLTANENRAAIGFLDEALPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLVAFQARPFVMLKAA
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