NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302182_10296345

Scaffold Ga0302182_10296345


Overview

Basic Information
Taxon OID3300030054 Open in IMG/M
Scaffold IDGa0302182_10296345 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025071Metagenome / Metatranscriptome203N
F057062Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0302182_102963451F025071GAGGMIHQSESPRHEMTSGEAGIVGAVLGFGLVALALYLAIARYHIRKEQLVEAGLYVFIVTAAIVGPVLRKFVTTGTRKKRPPFVIPARRD
Ga0302182_102963452F057062N/AEFACEEMPPETDLQEVLFSEIVTSVCYWSTVVLLAVAGAGLLYWRLRHTGSAGAPVTDPFGVTTPPWMMLSLPPIGVAASLSHAAWCAARGRRAWRMLMTAASLIAVMSATTVLETYLTA
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