NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302181_10121969

Scaffold Ga0302181_10121969


Overview

Basic Information
Taxon OID3300030056 Open in IMG/M
Scaffold IDGa0302181_10121969 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025793Metagenome / Metatranscriptome200Y
F027915Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0302181_101219692F027915N/AMPTKDRTRRRFLASDVQLVVERSSEHPVEYAIVLLALRDGRWRTMRTFDNAHDPREHHEHTYVGLEKQSPTVTYGPVNDAMYAAELKLLREWRDIVHAWEHMQ
Ga0302181_101219693F025793GGAGMSEITDKTDELFMAASRSDDDLGYPADVAFVPSDEEWTDDVLWRNLIEGQATVLVGEDTELLLVPLRRGVIDRLTGRVPVSVAPRTHGHASS

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