NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302179_10000595

Scaffold Ga0302179_10000595


Overview

Basic Information
Taxon OID3300030058 Open in IMG/M
Scaffold IDGa0302179_10000595 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23599
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y
F095027Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0302179_1000059514F026629N/AMKVLLIHSEDDPENGPWASLPWDRVVDLGLGGKNSYARWSRQFRCAVTNLNALRHGFDDFRRIRDLLGLGCGRLIDEYGLDWWEIMSLLLHGEMEILILLQRFAQTVSSGDEVYVTRPGLHANLLRGLLAAQLNVFPAGRGAQKGGLRHYIRRASRLSASQMTDVFWDKYDAGYQFRGRLGRKRRPSARPVVLLPTAYVNVSRTGIAYANSFPEENFLLVTTRKSGWVRNTPRNVTAAWLSSYACVRDRSDETAAMGDHWRSLLDELCRAEEFKILNRLGYLDSFPRWFRHGLEVRDAWRNVLDNEPVQGVLCADDSNPYTRIPLLLARERGLPNVACHHGALDCRYVFKRSYGDVIWAKGTMEEDYLVRVCGAPQEKVEIGAPALPANWKHSASQAFRPYLLFLSEACEVSGGRAEEFYRDVLPQLADLALATGRELIVKLHPAESKNERARLLARVLSIEQKRSARIVDGPLTEDLLEKAWFGITITSTVAMECAIRGIPCFLCKWLEFWPYGYIEQFNRFGVGRSLNDPSEIDKIPEYLQQHAVRADVSATCWQPAAAGRLRQLLTTPREAYITATR
Ga0302179_1000059522F095027N/AVLTPRKKRAHRAKLVTDPVTGLPALSAGPNAPTLSSKEVEEILASFP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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