NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311353_10238066

Scaffold Ga0311353_10238066


Overview

Basic Information
Taxon OID3300030399 Open in IMG/M
Scaffold IDGa0311353_10238066 Open in IMG/M
Source Dataset NameII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1693
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000830Metagenome / Metatranscriptome872Y
F006669Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0311353_102380661F006669GGAMDHPEGSRSPFTQVELREMWTYSDGARTVKGSWRPGGAAAAGSWVLVEPGTGNVQGVVPAGEFSGRFRPVDVFADVPGLPDYLGTVTAPDGTALVDLVLDYNPFMLANGPGRAARPHALIVPRSHRDGWSSATPS
Ga0311353_102380662F000830GAGMSQPAGEIGHLRDEELPAVRVIVLPDLNGQVFEDDLDPGDAVFDGNRTPMLVWHERYPLGRGWRSGWVLTYDTDGQGNPDDYIVGLSLADVDAAVAQARDYLRSVGYRAHGWPRS
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