Scaffold Ga0310040_1091461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310040_1091461

Scaffold Ga0310040_1091461

Overview

Basic Information
Taxon OID	3300030493 Open in IMG/M
Scaffold ID	Ga0310040_1091461 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	868
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.9918	Long. (^o)	-106.0796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060548	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310040_10914612	F060548	N/A	STVTNRPKQHRVTDFVDMQVATLMRNHAGEELCIEDLVDAARRDMPNFDWNNSKIRNSVTRLEKKGLVGSKHEIRSKKLCRVPHLI

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