NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310037_10000090

Scaffold Ga0310037_10000090


Overview

Basic Information
Taxon OID3300030494 Open in IMG/M
Scaffold IDGa0310037_10000090 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82614
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (80.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006802Metagenome / Metatranscriptome364Y
F086492Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0310037_1000009040F006802GGTGGVISYFMPLILCLTVALSVGIGVLTAYAAVIGILQACGRASQMRPAETRPRLVLVPTQNHASGD
Ga0310037_1000009054F086492N/AVTGITASRDAGKIIEASERGGGSEMLGKCTNPSCSALFRYLEEGLLFRLESDPNLRMSNPKAPEYYWLCRSCSAEMTLRISNEGRVIPFALPAPVPHGPQGSEVIAAERQKGLLLSGVSFSTNRHRGRARFVG

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