NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310037_10048746

Scaffold Ga0310037_10048746


Overview

Basic Information
Taxon OID3300030494 Open in IMG/M
Scaffold IDGa0310037_10048746 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2018
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y
F061180Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0310037_100487461F061180N/ALGEVWRDDMYRQFGEALDEVTPGITQYLAATEAHEAHLAVLIDRLRGYLETGLGTGAGTSRAESDRGKSA
Ga0310037_100487462F014996GGAVTTVHADIDALKGLHEAMVRFRYAQREVTERGGDEIELTRASLAAKASHWQARLEQDRAELEACRASGGEEAAPDCSAYARAVEQTGERLELIRRWQQRVEVEADEFRGTAGAFGDLLDSGLPRAETQLLALITSLEAAHRVQASGS
Ga0310037_100487463F013663GGAVPARPDRDGDEQLRLLGAAWEEAARHWQDEVARQFEADHWTPLVEQSRGYLEALRSLLDMFEAAERDTEF
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