NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310037_10154302

Scaffold Ga0310037_10154302


Overview

Basic Information
Taxon OID3300030494 Open in IMG/M
Scaffold IDGa0310037_10154302 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009705Metagenome / Metatranscriptome314Y
F027951Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0310037_101543021F009705N/ASQAPDYGDLGQAFPSWPGRGNDAILQPPKPEIRPSPQILQRAADRDADFEAAD
Ga0310037_101543022F027951GGAMDRPDLRAVNGGREDPVVRRRRFEKAHPEAVILPPCAGRWRAVIPAGLIPGDGTRTTLGAWDLTDLMDQLDAIYPDSSQET

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