NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310037_10351423

Scaffold Ga0310037_10351423


Overview

Basic Information
Taxon OID3300030494 Open in IMG/M
Scaffold IDGa0310037_10351423 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014056Metagenome / Metatranscriptome266Y
F017683Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0310037_103514231F017683N/ALLRQGCAHRFSWPRIDDNGRHYQICLACGTAYEYDWRMMRRTSRLLVAAVQHEFAQR
Ga0310037_103514232F014056GGAMTHFLQRRPPRRAPRVSLSGTISAVIRMENGRQVRAKLRQLSISGGLLDLATCLEERSWADLTIYLSSGPVRTTAEMMFPMRRDGAFLQPFRFTSVGAEELHALDREVTGLLQQSVRSKTGEAGLR

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