NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268240_10000004

Scaffold Ga0268240_10000004


Overview

Basic Information
Taxon OID3300030496 Open in IMG/M
Scaffold IDGa0268240_10000004 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9814
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Penjamo
CoordinatesLat. (o)20.686Long. (o)-101.875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004425Metagenome438Y
F007136Metagenome357Y
F010385Metagenome304Y
F057938Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0268240_1000000419F057938GGGGGMENQGVPESWIGQEVVLHTISDREFLATLVEIKDFGFAYHFRDDEDIIFAPWSVLRWMRLAGEGDEFYRT
Ga0268240_100000045F010385GGAGGVNESSAPHAHPSTEDHDRQDHPHACNGGWVTIGQIVLDPETGEEMEEYALYLCRRCADSR
Ga0268240_100000048F004425GGTGGVNSTHLLPAMRELYSRRPEYLHHEPWELVHVLFSLGYVDGLADEGEIAAAVEVARGDYPQWRAA
Ga0268240_100000049F007136AGGAGVEGCLMVGSITARTLDYFGLLVAASVFALLSAVVTAICVRYEARGLAWLWAAAFFGSALVAAYCLEKLL
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