NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268258_10072364

Scaffold Ga0268258_10072364


Overview

Basic Information
Taxon OID3300030502 Open in IMG/M
Scaffold IDGa0268258_10072364 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Sf.rz (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044772Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0268258_100723641F044772N/AGTFFTPVGERGLALHELHEVSGLVMGDTPYEEYVPTSEELHLLKKEFPRVYETYWEVLCHFHICGQITSWRTRGVKQLSWASYLFNGVNQKDQPVTRLAPSSDEEIADRIKASVDSYTTESNEDTFKPDTVFESFHHQARTPISNRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAYGKSIALLPAMAAGIQSGLRALAQSLCRVEKVVDSQGEPIVDSEGRPIVKRPNPRVEL
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