NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311370_10789248

Scaffold Ga0311370_10789248


Overview

Basic Information
Taxon OID3300030503 Open in IMG/M
Scaffold IDGa0311370_10789248 Open in IMG/M
Source Dataset NameIII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1096
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000830Metagenome / Metatranscriptome872Y
F006669Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0311370_107892481F006669N/AVADDPERSFTQVELREMWTYSDGALTVKGCWRPGASATAGTWALVDQGTGNVQSVVPAGEFSRRFRPVDVFADVSGFPGYLGTVIAPDGTALVDLILDRDPFMLANGPRRAARPHTLLVPRRQRDGWSSATTSELAACQTAMTLV
Ga0311370_107892482F000830GAGMPKPPGEIGHLRDEELPAVRVIVPPDRSGRVFEDDLDPDDVVFDGNLTAMLVWHERYPLGRGWRSGWVLTYDTDGTGNPDDYIVGLTLADVDAAVAQARDYLRSVGYRARGWPLP
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