NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311370_10995793

Scaffold Ga0311370_10995793


Overview

Basic Information
Taxon OID3300030503 Open in IMG/M
Scaffold IDGa0311370_10995793 Open in IMG/M
Source Dataset NameIII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)936
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F036729Metagenome / Metatranscriptome169N
F057062Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0311370_109957931F001473N/AEMYERLQLMIRQRGDTGFRLAVRDAVLQPRNPFEPANKRRPKPALAIVISVVLALAFVFSYFSFHHGA
Ga0311370_109957932F057062N/AMAMLEREEIRSLVSDSAGLPSAADYACTGLQPETRLQEELFSDLTSSVCYWSTVVLLAVAGAGLLYWRVRHAGFAAPPVGDPFGVTTPPWMMLSLPPIGVAASLSHAAWCAARGRRAWRMLMTAASLIAVMSATTVLETYLTAL
Ga0311370_109957933F036729GAGGMIHQSESPRHEMSSGEAGVVGAVLGFGLVALALYLAIARYHIRKEQLVEAGLYVFIVTAAIVGPVLRKLVTRGTPKKRP
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