NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268243_1000828

Scaffold Ga0268243_1000828


Overview

Basic Information
Taxon OID3300030510 Open in IMG/M
Scaffold IDGa0268243_1000828 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4780
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003251Metagenome / Metatranscriptome497Y
F055487Metagenome138N
F074494Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0268243_10008282F055487GGAGMAEQIPEAWIGQEVTVYFGLEGYRQPGILESVSERGIVVKSGQEGAEEHVFWYPYTSVLRLMRGRPRGAEVRSF
Ga0268243_10008283F003251AGGAMKTRTYTTEEAAKKAAARAYRPAILRLPNGRYACFQAGDALPQGARAVSRWGTDRWRAYN
Ga0268243_10008284F074494AGGVEIRGIPFCEACAREQEVYFAIGELTQEETRDLRGEPLSKSLGKTLGEMLSGMRRQRTDDLGAARHLDLPRVGKPGSLRIRKARQSQPENGQNRGRRPNKVEHVSEDAQVLIRAAREVHVERHGAQTFLPGSLLPFLEAAKRTGIRSDRQRYYDAIEDLEYEGAIEWDPSARYARGDKHYLITQRGLNDLDSAGTVAIQEGQQRLFEG
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