NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268243_1002717

Scaffold Ga0268243_1002717


Overview

Basic Information
Taxon OID3300030510 Open in IMG/M
Scaffold IDGa0268243_1002717 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2952
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035071Metagenome173Y
F040320Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0268243_10027172F035071GAGGMREQRWEDDRANQLLDAARVILEAAGGWQGLEDDDDPARLLRFTELYFSEGMRLKVWPYVDQMNRGIEVGDLEDLRLGVLGLLRIILCADTGPQ
Ga0268243_10027173F040320AGCAGGMEAPQLRGEHRFRYVARGVSLVIACMMCLGVFVVPLRVTGSEVPSALAMANLPLPDLETNENAPPLDGIYVVALGEEAEDADKDPLNSKLLRMLLLTLCFGLSVGWLFRNTQKQGALCSLAFVGASFGTACEDLPFLGVFRL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.