NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268241_10151002

Scaffold Ga0268241_10151002


Overview

Basic Information
Taxon OID3300030511 Open in IMG/M
Scaffold IDGa0268241_10151002 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Amatitan, Jalisco
CoordinatesLat. (o)21.053Long. (o)-103.902Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063102Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0268241_101510021F063102N/ADTDSVQKQIDYGFAGDVGTTPPMDHRIDETGISTPECFDQSREGEPCR

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