NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268242_1010540

Scaffold Ga0268242_1010540


Overview

Basic Information
Taxon OID3300030513 Open in IMG/M
Scaffold IDGa0268242_1010540 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: San Luis Potosi
CoordinatesLat. (o)21.766Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001647Metagenome / Metatranscriptome657Y
F085141Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0268242_10105402F085141AGGAGMGEQIKTPLDAALILANALDTYREQYPLLGEEIEEIQNAVSVPRIRLKFKTGETFVVDITREPRARRNPV
Ga0268242_10105403F001647AGGAGMTTSRDTTVQDILERLSDLENYPEGALAPYEEFRVGSKTYYFAPGGFLYRKNPGAEEARGFFCGYLTDEIWHHRTDNG

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