NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000005

Scaffold Ga0272420_1000005


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000005 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)250369
Total Scaffold Genes318 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)178 (55.97%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (28.57%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001951Metagenome612Y
F003820Metagenome466Y
F005901Metagenome386Y
F008668Metagenome329Y
F013598Metagenome269Y
F017941Metagenome237Y
F021452Metagenome218Y
F021896Metagenome216Y
F036036Metagenome170Y
F037509Metagenome167Y
F048685Metagenome147Y
F055319Metagenome138Y
F058565Metagenome134Y
F059497Metagenome133Y
F065269Metagenome127Y
F070712Metagenome122Y
F094626Metagenome105Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000005101F065269N/AMIRSSESASIACYKLRNARRESLLSQNQTASEEESTNASLNTEEENMNALLFDHEMIKISISTELNA
Ga0272420_1000005102F021452N/AMPDDSFDFKSFTVDVILSSLKKIFRSFALIDIKVTDITFIDESLISKLCERFNIQSILLSKSKLIQLYDEISDQKSITHALYTLIMIQEHKNEMMFLLITCLDQHKIIIENL
Ga0272420_1000005103F098340AGAAGMIEIAVYQTLVKNKKIKIFSLIISEINKALSSVKDFAKLNEMTSVMSLNELKKKLSIIYHDFLNVFDREKTTQLLLHRSYDHKIELKDESQSFKS
Ga0272420_1000005115F021896N/AVTKNNLESENFFKNVKCNLTFLKSDKEYIFSDEMNERDSYSTIVIDESFIEVREI
Ga0272420_1000005120F055319AGCAGMIEVRVKRLKLVDKMICIQIFERDLAQKLNFFREQRDFFIYTDDVIVINVHDMQSEELLI
Ga0272420_1000005121F001951N/AMMIMTKLKFIDSSRNERERDEDTVETTVTEVMIFELKKLLVDAKMFLTLTNETMMKMK
Ga0272420_1000005122F003820N/AMNDLQNKINNRLQNALSICSKNFTLLTHLRIFLQDVNSKQRVNYQLCSERCTVIVKVTVVPDKCATSLSITTSIIDYVKSTISFIFESARSSIICYICKILDHLFKNCSQLNKINTSASHVFISRLHKIIISKNKENKKMSFKNSEAKN
Ga0272420_1000005126F017941N/AMKIADLEKNISESIYKQILETIEIDENCTLLREAIARDETQYKDIKLKNC
Ga0272420_1000005127F013598N/AMNFIINLSDSSEYNAILTIICRLSKKRHYISYITDDKDITVEKTAEMLIQ
Ga0272420_1000005130F008668N/AMSFDSDTTDYETTCEQLKARKADDIVIQMKKLLNFDHQQLKKTKLIIEVQINKHK
Ga0272420_100000572F058565AGAAGMNCTNRSSAGSKTIASDVDSSQENRDAESKCSRNDEENVANIIDLLIKISTLEKEKSKDH
Ga0272420_100000576F094626N/AVFLNERNIITARLFKKLNDKMLDSFKITDSVDFSYKLKLSETMCIHNIFHSELLRSVVDDSLSDQKNESSRSIVINDENE
Ga0272420_100000577F005901N/ALIYELFDHLKEIYDELNKNQKSRREYNALKQADKSFNIFYFNFMKLFSYLDYDDRILMNDLQNKINNRLQNVLSVCSENFTSLSRLKEFLQDVNNKQRVNYQLRSERCTVIVKVIVVSDKCATSLSVMTSIINYVRSTIFSISESARSSIICYICKISNHLFKNCSQNKIDISTS
Ga0272420_100000578F000597GAGGVIFIKDAMKDVLISSMMSMSNDFFASESLTTECVLSSNEISYLLKSLIDTEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYSNLMIQDHTVNIASMLITQLEQHQMILGKT
Ga0272420_100000585F013598N/AMNFIINLFDSSEYNAILIIICRLSKKKHYISCIIDDEDITVEKTAEMLIQ
Ga0272420_100000588F036036N/AMTRFMLISNIIDLLSMLVNLIYHLFSCFDQSFMSEDQCFVHLFRYILDSINLQAFANAFILDDVRVEAHMRMKALVHEEEDQEDD
Ga0272420_100000589F013598N/AMNFIINLFDSYDYNTILTVICKLLKERHYISCIINDEDITVEKTAEMLLQ
Ga0272420_100000590F048685N/AVLKNFNDECIHYQRITILILNQIKIADLKKNISKSIYKQILEINKIDENCTLLREAIARDKTQCEDIKLKNCHVQKRILYHDNQL
Ga0272420_100000595F037509N/AMISLVIDNETSIKKFVYLMINDIERQNNIKKSIKSTRTYDHVIARESIAQSVASVQID
Ga0272420_100000597F070712AGTAGLIQSESLNKIRSYLIHLNNEHQVINDIKEKKFMIKIRKQVIFAEKRDSLNLYKKIEVIISVDSSKSRDATLTNVKETDIQTESCFICHKSDHSFKECSNQTSRVNALEDDEFDRFTSNSESDSDSKN
Ga0272420_100000598F059497GAGMFIEDIDRKIVYNTQCELDVINVFSVDETIQNLENIKVKLSLKYQNFLDIFDQAQADKLLSHRSYDHKIKLTSDVTSSRCQAY
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