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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000027 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 196746 |
| Total Scaffold Genes | 235 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 114 (48.51%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F013598 | Metagenome | 269 | Y |
| F017767 | Metagenome | 238 | Y |
| F017941 | Metagenome | 237 | Y |
| F019260 | Metagenome | 230 | Y |
| F021452 | Metagenome | 218 | Y |
| F021896 | Metagenome | 216 | Y |
| F032102 | Metagenome | 180 | Y |
| F038010 | Metagenome | 166 | N |
| F079402 | Metagenome | 115 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100002714 | F021896 | N/A | MMKNNLESENFLKNVECNLTFLRSDKEYIFSDETSERDSYFTIVIDKSSIKVCEI |
| Ga0272420_1000027180 | F017767 | GAGG | VTFIKDAMKDVLISSMMSMSDDSFASESLTIECILSSNEIDYSLKSLIDIKAADYSFIDEVITQIVCD |
| Ga0272420_1000027183 | F032102 | N/A | MKIADLKKNISKSIYKQILETNRIDENCTLLREAIARDETQCEDIKLKNCRVQNEILYHDNQL |
| Ga0272420_1000027184 | F013598 | N/A | MNFIINLFDSYDHNAILTVICRLLKERHYISCIIDDEDITVEKTAEMLLQ |
| Ga0272420_100002719 | F102181 | N/A | MKEIMIIVHVHALYQTLLSCIQSIFVFLIFKYVKKLLEFKSNKDNNRICKEMNDEERLIVQDLCNDLSYHHERLRIQLYIN |
| Ga0272420_1000027193 | F079402 | N/A | MQNKLKMNKNHFSIEEMKIAYVKSRVSETIKHIALRIKNMITNSFLEAEKISSIINKMYNDFNQHHTTQRQFLKLYQNKIFFHEF |
| Ga0272420_1000027203 | F017767 | GAGG | VTFIKDAMKDVLISSMTSMSDDSFASESLTIECVLSSNEISYSLKSLIDTEAADYSFIDEVIA |
| Ga0272420_1000027208 | F038010 | N/A | MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDFFAQRHFLLCFSLSEICTFQRFDDQSVVFDSITHYALVKLRVSSEKLEETLFYVTQLSQFSVVLDLF |
| Ga0272420_1000027209 | F019260 | N/A | MIQELKSMSRIDIKSEKYSNSELYIEERENKLNQFIFKLISKLKLNANRYSTLESRLLYEYSRLLRNAVAQALSRMTVQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIKYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLLKSKAVIHSVSVISTVLAYLVKYATFSAGSKATTSSSGNLMNLSIVNMKKRDSLIFEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVVSLFALAISINNLAFDTSLALGKA |
| Ga0272420_1000027214 | F032102 | N/A | MKIADLKKNISKSIYKQILEINRIDKNCTLLREAIARDETQCENIKLKNCCVQNEILYHDNQL |
| Ga0272420_1000027217 | F021452 | N/A | MLDDSFDFKSFIVNVILNSLEKIFQFLALINIEVTDIMFIDNSLISELCECFDIQSISLFKSKLIHSYNEIFDRRSITHALYISVTIQEHKNEMMLLLITRLDQHKIIINNL |
| Ga0272420_1000027225 | F000597 | N/A | MMSMSDDSFASESLTTVCVLSSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIREFNDHYAKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQY |
| Ga0272420_1000027228 | F017941 | N/A | MKIADLKKNINESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |