Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000030 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000030 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	189176
Total Scaffold Genes	196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (27.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

189176

Total Scaffold Genes

196 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (27.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F019260	Metagenome	230	Y
F028368	Metagenome	191	Y
F038484	Metagenome	165	Y
F061402	Metagenome	131	Y
F065268	Metagenome	127	Y
F083460	Metagenome	112	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_1000030131	F005901	AGAAG	MNDKLIVNVDQFDDETICIVYIMSRLEDDAAKHIFAXCCFDSLNSFTSIYELFDHLKEIYDELNKNRKSXREYNALRQADKSFNVFYFDFMKLFSYLDYDDCILINDLQNKINNHLQNALSVCLENFTSLLRLKKFLQDVNNKQRVNYQLRSERRTVIVKVTVVSDKCTTSLSVMTLIIDYVKSIIVSISESARSSIICYICKISSHLSKNCSQNKINTSASQAFISRLHEIIISKNKENKKMSSFKNSEAKN
Ga0272420_1000030152	F038484	N/A	MCIARMLSAFXRSSRIFIIFLLRCNLCAEIALMSATRSLYFSHRXFYXSLXYCAIAMLLLVEIVKKRKHRLHLNCIFTSSXMKTFRSTIFLMMSEQEMTRLTFVKXAHISLHACLISCVXSLTXLCSVILFCSMFRXTCSKLMYVSVFRVLMFTLLNASATXCRVXFXSVSSLRSLLNSSFFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILMTXFVFICRRCASHRSFVFNCISKTRTSDFNLITEFSIYMLVIMSNLFDFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272420_1000030164	F061402	N/A	MQDDXFVXLFMTEFVNNNAILSLIKQSTFFLNKNFHSRMSFNLNSIEYEITHARIKAGKAKNIFKHMK
Ga0272420_1000030168	F065268	N/A	MTRSSESASITHYKLRNARRESLLLQNQTASESEEENMNASLNTEEKNMNALLFDHEIIKISINTELNAXISIHEADDIVVFIK
Ga0272420_100003027	F008169	N/A	MLSRSSTEEHFKEFRNRFSQISDADSTKSSSAASFIHEDDESFVKTVIFLVFYEIXKARSLALDEETDQLYELNKQQEDEIKELKTRLQAKEITSSDFIYSERSRSQKILDSSLFTDEKNSIXKNXYDKIQNKLEINVDLFSNERVKLSYIHSRLFDDAVEITQARCQRDCVNLYKIVDDFLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHLRLQFIXIDQLVQSDSLKEIRFYLIHLNNDQRVIRKIKNKIKRVDDIFKTIFHKATVV
Ga0272420_100003028	F028368	GAG	LCKLDEILLKENYFEKLFLIDAYLISQNQSFSLCSLIDSDSIVYMIIHFNLVNKICEKLRIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIKSHKKLTVSMLIVDIDHHEVMLSKLXMNKNEILLNMQNDVIVFSNRLNTSISIFSISLNSKHSSXSRSTLFSSITQTKVFMMLKXLIXKESFLIXSINAALFKTLLNHSKKNKIEVFALFMMNINRKIAYNTQCDLNALNVSLINETTQNLKDIKANEAVIEISXVSRCFXLSSIE
Ga0272420_100003030	F008115	N/A	MNFITELSLSEDYNIICTIICHLIKEHHYVLCHXRDDDISIKEMIXIMLXNVYRLHDLLSSIVLNRDSQFISTMXKSLCKRLKITASLFTVYHSEINDQLKRVNQDVERKLRIYCNYMQNDXVKXISMMKFSDNSNIFLITSMILFYFNKEFHLRMSFDLNTTDYKTTCERLEAKKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHKXNVIYEVNDXVXLSFKNVKTTRLCKDLKDKQLNLYQITVKVNIFYHLHLSVSMKHLHSMFSSKLLRSYSEDFLSRQHSESFRSITIEDDEHXEIDDILNFRRYRDQIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272420_100003049	F083460	GAG	MRLRMKSSDSQAYSDALLKLNASSIEYATRYXLHELSNHRLNHKESQGNSENDDENEAAEAV
Ga0272420_100003060	F019260	N/A	MSQFENISNILSSTSLVSINEFITVAQFRTHVNNAFEAXYTFLIELQTXFNDIIIQYINXVSACQQEHKQTQVELKQFQTNNEILSEMIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANHYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISVLRMRNRIFIEYLFDFQQHIDAIEYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKPKAVIHSVSVTSTVLAYLVKYATLSTGSKATTSSSRDFMNLSIANMKKRDSLILEKRQHRMINHLCLYCDKPEHQVATCNSKFKIQLRVVSLFAFAISIDNLAFDTSPVLEKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000030

Overview

Ecosystem & Geography

Associated Families

Sequences