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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000054 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 163004 |
| Total Scaffold Genes | 180 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 102 (56.67%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F021896 | Metagenome | 216 | Y |
| F055319 | Metagenome | 138 | Y |
| F071806 | Metagenome | 121 | Y |
| F074204 | Metagenome | 119 | Y |
| F087980 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_1000054177 | F013598 | N/A | MNFIINLFDSSKYNAILMIICRLSKERHYISCIIDDEDITVEKTAEMLI |
| Ga0272420_1000054178 | F017941 | N/A | MKIADLEKNINESIYKQILETNEIDENCTLLREAIARDETQYENIKLKNC |
| Ga0272420_1000054180 | F000597 | N/A | MKNVLISSMMSMSDDSFASESLTTECILSSNEISYSLKSLINIKAADYSFIDEVITQIVCDQLQIELLILIRAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTAFMLII |
| Ga0272420_100005468 | F001951 | N/A | MMIMTKFRFIDSSKDERERNEDIVKTTVTKMMIFELKELLVDAKTFLTLTNETMMKMK |
| Ga0272420_100005477 | F087980 | N/A | MKLSYNLLINDERAVKQFTQSVIENSVEIFRVMHELQNQVQQHDVIISFLFIVFSSSIYIKLNSQFLAMITQIIAQILNNQSLFIIHLSANSVTVFITSRFKKLFDIFKYEKNKD |
| Ga0272420_100005479 | F001951 | GAG | MMIMTKLKFIDSSRNEKERNEDTVKTTVTKVMIFEFKELLVNAKMFLTLMNETMTKMK |
| Ga0272420_100005480 | F055319 | AGCAG | MIEVRVKRLRLVDKIICIQIFERNLAQNLNFSCKQQDFFIYIDNVTVVDVHDTQSEELLI |
| Ga0272420_100005481 | F074204 | N/A | MIVFCILRQAQSKVLTLALIDSEVSAYVFMNKFFTQQHHFFLHQLIHSRRLREFNDQVALINDIIHVVEITMILDEHIEKLFFYVIELSQYLIIMNLL |
| Ga0272420_100005483 | F021896 | N/A | VTKNNLESEDFLKSVECNLTFLKSDKEYIFSDEMSKRDNYSTIVINESFIEVREI |
| Ga0272420_100005484 | F071806 | N/A | MKLQSQIIALNSIQLHLSLIISALLQILVFMNLEIEEFNIENIKSQLNQNILNLDEDFVNILTQTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |