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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000078 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 136623 |
| Total Scaffold Genes | 184 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 109 (59.24%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (41.67%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F021452 | Metagenome | 218 | Y |
| F021896 | Metagenome | 216 | Y |
| F044226 | Metagenome | 154 | Y |
| F061401 | Metagenome | 131 | Y |
| F079402 | Metagenome | 115 | Y |
| F081945 | Metagenome | 113 | Y |
| F087980 | Metagenome | 109 | Y |
| F102180 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100007810 | F044226 | GAG | MIEFSENFNIFSIISMTSFYFNKSFHSRMSFDSDMTDYETTRERLEARKADDIII |
| Ga0272420_100007814 | F006206 | GAG | LCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLIDSDFVIYTLIHDKLVNKVCQKLEIQSILLAKEKLIREYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKF |
| Ga0272420_100007817 | F021896 | N/A | MMKNNLKSEDFLKSVECNLTFLKSDKEYIFSDETSERDSYSTIVIDESSIEVHKI |
| Ga0272420_100007821 | F008668 | GAG | MIKFSNNFNIFLITSMILFYFNKEFHSRMSFNSDTTDYETTHERLKVRKADDIIIQMKKLLNFNHQQLKKTKLIIEVQINKHR |
| Ga0272420_100007824 | F006206 | N/A | LCKLDEILLKENYFEKSFLIDTHLISQNQSFSLCSLIDSDSVIYTIIHSNLVDKVCEKLKIQSISLAKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKF |
| Ga0272420_100007825 | F061401 | N/A | LNNDQRVIREIKNKIKCINDSFKTIFHKTTVITQSVDHSKFNQLKSRDAILTNVKEADILVESCFICHKFDHSSKECLDRSTRINVVNNEYDRFDFDSNFDSKN |
| Ga0272420_100007827 | F081945 | N/A | MSSHSSTEECFEEFRNHFSQIFDADSTKSSSAASFIHEDDESFAEMIILLVFYEV |
| Ga0272420_100007829 | F000597 | GAGG | VTFIKDAMKDVLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLINIKAADYSFINEVITQIVCDQLQIKSLTLIKAKSIREFNDYYTKKLITHVIYSNLTIQDHMIDIASILITRLDQHQMILEKT |
| Ga0272420_100007853 | F087980 | N/A | MKSSHNLLIDDERAVEQFTQSMIENSVEIFHVMQELQNQVQQHDIITSSLFIIFSSLVYIELNSQSFMMITQIVVQILNNQSLFIIHLFANFVAVFITSRFKKLLDIFEYKKNED |
| Ga0272420_100007857 | F079402 | N/A | MRNKLKMNKNHFSIEEIKIAYVKSRVSEMMIKHIASRMRNMITNSFLEAEKILSIINKMYDDLNRHHTTQ |
| Ga0272420_100007859 | F021452 | N/A | MLDDSFDFKSFIVDIILNSLEKIFRFFALIDIKVTDMMFIDDLLISELCERFDIQSISLFKSKSIHSYDEILDRRSITHALYISVTIQEHKNEIMSLLITRLNQHKIIIDNF |
| Ga0272420_10000788 | F102180 | GAG | LTLIITHHEKLKELIARMKHFADIMTKNQECHEKIYKVYSDSQTSLKTVKVMISTKDQTRLQQVQIAHESIQS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |