NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000092

Scaffold Ga0272420_1000092


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000092 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129388
Total Scaffold Genes138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (43.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021896Metagenome216Y
F044226Metagenome154Y
F071806Metagenome121Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000092135F071806N/AMKLQLQIITLNSVQLHLFSITSAFLQILAFMNLEIEEFNVEDIKSQLDQDTLNLDEDFADILTQTL
Ga0272420_1000092136F021896N/AVIKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSERNSYSTIVIDESFIEVRKI
Ga0272420_1000092138F086377GAGLILDCDNIQISIVHAKAKFFFEFLDEENKDDHLKVIDLNENFAQIFIQITMKF
Ga0272420_100009215F044226GAGMMKFSENFNIFSIISMTSFYFNKDFHSRISINSDTTDYKITCKRLEAKKANDIII
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