NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000094

Scaffold Ga0272420_1000094


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000094 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127497
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (48.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F041516Metagenome159Y
F059497Metagenome133Y
F061402Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000094102F061402N/AMTEFINNNAISSLIKQSAFFLNKSFHSCMNFDLNSIEYKITYTRIKVIKAKNIFKHMK
Ga0272420_1000094111F059497N/AMFIKDIDRKIAYNTQCKLNIINVFSINEMTQNLENIKVKLSSKYQNFLNVFNQAQADKLSYHHSYDHKIKLTSDATLSYC
Ga0272420_1000094112F021216N/AMKSRMKSNAMRREHHELEKALRNHERSDDDHSNDILNEHTESISSCDIIEESNERERE
Ga0272420_1000094117F041516N/AMLQTLINDTQMIQKVIHIHEAYNSSLRNHEVIHEKENFSDIKKMLHMSKECILVEDFNLHHFT
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