NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000101

Scaffold Ga0272420_1000101


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000101 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123890
Total Scaffold Genes148 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (54.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F040408Metagenome161Y
F048019Metagenome148Y
F071806Metagenome121Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10001011F071806N/AMKFQSQIITLDSVQLHLFSVISALLQILTFMNLEIEEFNVENVKSQLNQDTLNLDEDSADILTQTL
Ga0272420_100010119F048019N/AVNEHAFELFFAQAFVKALQDESTVYFLIMINVVEKSIIEYQVKVINNVMNHITNALKTQTLLIKLKEYEDVFLIKSINKLFLHEDHDHAIKITAKSLYELLYNLLNTELMTLR
Ga0272420_10001012F021896N/AMIKNNLESEDFLKNVECNLTFLKSDKKYIFFNETSERSNYSTIVIDESSIKVCEI
Ga0272420_100010123F102179N/AMFIHNVSENMNTCSAVHVRSMLLRVITLAMQETHLDEVHFLKDRISQFKSTTSRSTNVEILTYKDHNVTKKQFNSVAETVNCKQLISHAIVKVLTIHKTTYNFSSKFVVELIKILQQEDEFAVRLKADEMMSI
Ga0272420_100010125F040408N/AMYDYESIFDICIKNNVMKEEVSAAKKHVKMLQDVQNILMQ
Ga0272420_10001016F001951N/AMMIMTKLRFIDSSRNEKERDEDIVKITVTEMTIFEFKELLVNAEMFLTLMNEMMMKTKQD
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