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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000102 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 123770 |
| Total Scaffold Genes | 155 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (26.45%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (41.67%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F009377 | Metagenome | 318 | Y |
| F009580 | Metagenome | 315 | Y |
| F013598 | Metagenome | 269 | Y |
| F020121 | Metagenome | 225 | Y |
| F055319 | Metagenome | 138 | Y |
| F061400 | Metagenome | 131 | Y |
| F087979 | Metagenome | 109 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_1000102145 | F096307 | N/A | MLYIVVIQIDASLKENVLKHKKDVDLKDVCDTKKCVCHRHLLTTRNTKKCVCLEDNRSXLEDARKEKRCXVIFESNLNQI |
| Ga0272420_100010233 | F020121 | N/A | MKKLTEHLHDEMLITQIIYEFNVNLFHHSCFKYFIKDEVXLNACNFNITHFAIKLNNHNIDFFKIKHVFKNNSLIIELNLSTFMKIHLIFHVILLNHIVSDFLSSQCQKLQELIIIKNDERFXYINSILNFKHDKCYNSSLLKYYIDXEDYFFTXKSFHLLNNCEQALDEYHLINSVIEELHVLSCVIFQCQCQEL |
| Ga0272420_100010248 | F013598 | N/A | MNFIIDLSDSSKYNVILTIICKLLKERHYISCITDDEDITVKKTAEMLIQ |
| Ga0272420_100010261 | F055319 | N/A | MKRLRLVNKMICIQISERNLAQKLNFFHEQRDFFIYTDDVTVINVHDMQSEKLLI |
| Ga0272420_100010262 | F001951 | GAG | MIMTKLKFIDSLRNERERDEDIIETTVTKMMIFEFKELLIDAKMLLTLMNKMMMKMKQD |
| Ga0272420_100010265 | F087979 | N/A | VKEKNESSTSIYMNXAESRLDSSFIDLRLQKFVHMIEMIETELLRLKXRLLD |
| Ga0272420_100010266 | F008735 | N/A | MKEITIIVYIHALYQNLLSCIQLIFVSFILRYVKKLLESRSNEDSDRVCKKINDKRKLIVQDLCDDLSYHCKRLRIQLYINXRTENDEQEXDDNIMLLNLILKLLHYAKNLNXIFNHTLSELFNSTLIVDXKIVRXLHLSERITRXDFNVXKRCRKCRSFIMSKTELD |
| Ga0272420_100010268 | F001951 | N/A | MTMTKFKFINSSRNKREKDQNTVETTVTKMMIFEFKKLLINAKMLLTLMNEIIMKMK |
| Ga0272420_100010269 | F009580 | AGCAG | MIEVRVKRLRLVDKMICIQISEHDLAQKLNFFHEQXDFFIYIDDIIVINIHDTQSEEFLIXAFFSNFAXMLQLAVVAKLSLVADFLDLRNDQNLILNDDNDKV |
| Ga0272420_100010276 | F020121 | GAG | MKKLTEHLCDEMLIAQIIYKFNVNLFHHSCFKYFIENEVXLNACNLSITRLAVKLNDHNVDFFKIKRVFKNNSLIIELNLLTFMKIYLIFHVTLLNHIASEFLSSQRQKSXELIIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIDXEDHFSTXKSFHLLNNCEQALNKYHLVNFVIEESHVLSCVMSQCQCQEL |
| Ga0272420_100010290 | F061400 | GAG | MTSESIEQIMLLKYYNRIMNLNSEKTIIEAXNIYHKEKDEDNAIDESDDFFKTDLQNVLRSINV |
| Ga0272420_100010299 | F009377 | AGAAG | LNTEEENMNALFFDHEMIKISINTELNAXISTHEVDDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNEINITLKITQTRLQKENRNKNVIIHHLKAASSRQSTLISEDRFSKSIKLSNSFLFEDSTQNVDNXLSXMQNKLKANKNHFSIEELKIAYIKSXVSEAAIKHIASCMQDIFLNSFLEVEEVLSMINKMYDDFNHHHMTQRQYLKLYQNKIFFHEFXMKFQRFSAKLEYNNKILLNDLQHKISSDLQQVTLNEXITDLNEFVDICLQVNVRLTELNAQSVVKASAT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |