NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000103

Scaffold Ga0272420_1000103


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000103 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122168
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (56.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F061402Metagenome131Y
F089603Metagenome108Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000103119F089603N/AMYIDASQIQKKIAKIKTETETTVIFTHELVRFSKATSISDKIITTKAKLQAISDEIIICSEKALKNSEI
Ga0272420_1000103121F061402N/AMTEFVNNNVISSSIEQSAFFLNKSFHSHMSFDLNSTEYEITQARIQASKAENIFEHMK
Ga0272420_1000103126F098340GAGMIEVAAYRTLVKKKNVKIFTLIISEINKMLSLIKDSAKLNEMISVMSLKKLKKKLLIVYYDFLNVFDREKTIQLLLHQSYDYKIELKDESQSSRS
Ga0272420_1000103127F025887AGTAGMLIFCFINMLDDSFDFKSFIINIILNSLEKIFRFLVLIDIEVTDMMFIDDSLISELCERFDIQSISLFKSKLIHSYDKILD
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