Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000106 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000106 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	120463
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (29.55%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

120463

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (29.55%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F021026	Metagenome	220	Y
F021896	Metagenome	216	Y
F038009	Metagenome	166	Y
F058565	Metagenome	134	Y
F061399	Metagenome	131	Y
F076668	Metagenome	117	Y
F089602	Metagenome	108	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100010650	F076668	N/A	MTCLLLTSSFLACASACKTSKNSMHSIDHYAIKETSVFKSITTTKKIMHMSNALSTDILMLCNRKDATNQALLRCAKFENIRRSQKISFSKXSSKDXLKRLYMIMLERTCYNMIFAFSALSXVLFKKSLKTLCASLXKVSALLFRIITLVVEFSLTFCSMQTSTXXQFMSNASSFKIEIXDLXRISXXILMLCFSRQTRKCLSSSVR
Ga0272420_100010657	F058565	GAG	MNCMNCSNADSKTIASDVDLSQENKDAKSKHSRNNEENVANIIDLLIKISTLKKEKSKDHSXKKIALKLIQRFXLD
Ga0272420_100010666	F061399	N/A	MKVEEVINCFYAHVXKHHDLLEFFVSDQDTQFIFNIXKHMCKMLKIDVKLSITYHFEIDDQMKRINAIMKHYLQVFVNYMQNDXVKXLSEVEFIVNNTSSLITLASLFLINSDQNLHLDFKSSESLLKNFTFQAXNKLINVEKFIKKMKKLTEHLCDEMLIAQIIYEFNVNLFHRSCFRYFVEDEVXLNACNFNIAHFVVKLNDHNVDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVILLSYIASDSLLNQRQKS
Ga0272420_100010669	F019260	N/A	MSQFENISNILSSTSLVSINEFITVAQFXTHVNNAFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIKLKQSQINNEILSEMIQELKSMSRIDIKSEKYSNSELYIEEXENKLNQFIFKLISKLKLNANHYSTLESRLLYEYSRLLRNAVAQALSHMTVQHDKLVTIEQLVILLRQVFNDSDKQEIAQQFISTLRMXNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNKLFSELKALLIQMNVSSLNYEQLIIKCQQLNSQYHVTVQNLFKSKAVIHSVSVISTVLAYLVKYMTSSTDLKAMISSSRNFMNLSIINMKKRDSLILKKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLXIISLFALAISIDNLAFDTSFALEKV
Ga0272420_100010671	F021896	N/A	MMKNNLENEDFFKNVECNLTFLKSDKEYIFSDETSEQDNYSTIVINESFIEVRKI
Ga0272420_100010677	F094625	N/A	MKSSHNFSIDDEHAVKQFAQSMIENSVEIFCAMQELQNQVRQHDVIISFSFIVFSSSIYIELNSQFLATIAQIVAQILNNQSSLVVHLSANSVAVFIASRFEKLLDISKYERDKDELNAXKQSLIQRMNMNDDRYFSHRVKIIYVESRFIIDRKTYNLMSQYRVNDLCIIFIFADXQHKLHHCCDNSFETEDAHLYLRETLK
Ga0272420_100010678	F089602	N/A	MKNEXSSFIEISSEEDDDLSDIIDIALQTVNQQEIFHQRMFFLLIEEMIVVNKAIHVLLQSFAKI
Ga0272420_100010679	F001951	GAG	MIITKLRFIDSSRDEKERNEDTVEITVTEIMIFELKELLVDAETFLTLMNKTMMKMK
Ga0272420_100010681	F021026	N/A	MNKFFAQQHHLFLHQLTHSRRLQEFDDQVALIDDITHVVEITMILDEHIKRLFFYVTELSQYFIIMNLSXLHHHVIDVNFEHNIFILSFFFCLNHCCSFFIKIYDLNQQEENFSFEVNKVAFSQSRSQFAHKKQLSSQIAHKKQFSLQIAHKKQFSIQFACKKQFSFSFIXKK
Ga0272420_100010682	F038009	N/A	MIKASSFQLNYVKLYRRSIELICLKNNRSSKEKRILTLDFXXVFFLNDLKNTTRSFLFQMRDKTERDLFLVNELSIDXLFVSEREVILLLVSRXETELLLVSELRTELLLVSELKTELLLSSEXETRLLLASELKTELLLSNEXETKLLFASELNAELLLVSNL
Ga0272420_100010685	F094625	N/A	MKSSYNFLINDEHVVEQFTQSVIENSVEIFRAMQELQNQVXQHNVIISFSFIVFSSSIYIKLNSQFLAMITQIIAQILNNQSSFIIHLSVNSVAVIIASRFKKLFNISEYEKNKNXLNAXKQSLIQRMNVNDNHYFSHQVKIIYVESXFIIDKKIHNLMSQYRVNDFCIIFIFAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000106

Overview

Ecosystem & Geography

Associated Families

Sequences